Plotting (under construction)
We abuse of nilearn functions to create
plotting functions to be able to plot slices in a matrix pattern such as in:
These functions are used in some of our pipelines, however you can also
use them on your own. To do that, have a look at the functions in
neuro_pypes.interfaces.nilearn.plot.
Example:
from neuro_pypes import plot_ortho_slices
(TODO)
TODO: embed these images:
docs/img/cortical_thickness.png
docs/img/hammers_atlas_registration2.png
ICA
The rs-fMRI pipeline includes a plotting step where independent components will be plotted as in