Configuration
The main nodes in the pipelines are configurable through a configuration file.
We recommend using the YAML (https://en.wikipedia.org/wiki/YAML) format for this file.
To change the default value of a node parameter you
have to add to the configuration file an entry for the value
you want, as in: <node_name>.<parameter_name>: <value>
For example, let's say we have a
spm.Normalize12
node named anat_warp
in one of the workflows.
We want to set the value of the parameter bias_regularization
to 0.1
.
The entry should be:
anat_warp.bias_regularization: 0.1
The most direct way of checking the names of the nodes defined in
Neuro_Pypes
, is by looking into the source code.
You can also have a look at the
default configuration file
where we list the settings for the main nodes in each workflow.
In addition we have added a "Related settings" section for each
workflow description where we list the most important configuration
settings, taken from this file.